rs30115790 SNP Detail

Summary

• ID
  rs30115790
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78866431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATCCCTG GAGTCAACTT
  TATTTAAGGC AATTCAGACA TTGCTGAGGC AGGGCAATGT CTCCTGTTGA ACACTAGAGG
  GTAGTCTTTA CCTTTCTGTG CAAAGTGCTT AGCCAGCAAC CATGGATTTT CAAACCTGAC
  ATCACAGAGA AACACCATGC ACATGCATGC CAAATCTACA TCACTTACAC AACAATTCTA
  Y
  ACAACTAACA TATATTTATA TGTATCTGTG TGCAAGAAAC AAACAATACC CATTAATACA
  AGCAAGCACA GAGATGTACA AACACACACA TAGCCAAAGA CATAAAAGTA AACACATTCT
  ACAGACACTT AACTCACATC TGTACTCTGG GATGCTGTTT TTTACAACAA GGGACTGGAA
  GTCTGAGAGC TCATATATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45397634	mCV24564158	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss135365501	ENSMUSSNP6858589	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30115790					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78866431 () rs orientation: forward

Symbol	Name	Function Class
Gm65474	predicted gene, 65474	within coordinates
Rr578449	regulatory region 578449	455 bp distal
Rr578450	regulatory region 578450	within coordinates
Rr578451	regulatory region 578451	113 bp distal