rs30115755 SNP Detail

Summary

• ID
  rs30115755
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106944686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAG GCCATGTCGC TGGCCATCCT
  R
  AGAGTCATCC GCCTAGTAAG GGTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45397331	mCV23064082	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30115755					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106944686 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13669	CpG island 13669	within coordinates
Gm56792	predicted gene, 56792	177 bp downstream
Kcna3	potassium voltage-gated channel, shaker-related subfamily, member 3	Coding-Synonymous
Rr397927	regulatory region 397927	833 bp upstream
Rr397928	regulatory region 397928	1464 bp upstream
Rr582885	regulatory region 582885	1191 bp distal
Rr582886	regulatory region 582886	679 bp distal
Rr582887	regulatory region 582887	206 bp proximal
Rr582888	regulatory region 582888	928 bp proximal
Rr582889	regulatory region 582889	1597 bp proximal
Tssr31148	transcription start site region 31148	1189 bp downstream
Tssr31149	transcription start site region 31149	1557 bp upstream
Tssr35008	transcription start site region 35008	673 bp downstream
Tssr35009	transcription start site region 35009	936 bp downstream