rs30114954 SNP Detail

Summary

• ID
  rs30114954
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123029278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTATTTGTT AGAGCCCACC AAATGTCCAT GCCCAGTGGT
  TACGGGGAGC TGAGGCCTGT CTCCTCTGTG GAGAGTCCAG CAACACATGA AGGAGAGAAT
  K
  CTATGGAAGC AGCTTAAGGT TGCTGGCTGT CAGATGATAA TTAACCAGCC TGTATTTCAC
  ATGATAGGAT TAGCATTCCC TCCGTTGATT GATAGCTAA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45398217	mCV23886431	ABI	CRAMUS_MOUSE	f	SNP	T	G
ss135760887	ENSMUSSNP2099881	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320918237	CHEV_3_122938547	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs30114954					SNP	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123029278 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13775	CpG island 13775			363 bp proximal
Rr584473	regulatory region 584473			758 bp distal
Rr584474	regulatory region 584474			930 bp distal
Rr584475	regulatory region 584475			457 bp proximal
Rr584476	regulatory region 584476			1291 bp proximal
Synpo2	synaptopodin 2			Intron
				Noncoding-Transcript-Variant
Tssr35497	transcription start site region 35497			482 bp downstream
Tssr35498	transcription start site region 35498			505 bp downstream