rs30114664 SNP Detail

Summary

• ID
  rs30114664
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127622671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTAAGAA TTTATAACTT
  AATGCTCTAT ATCTGAACAA ACACAGCCAA CGGTGAAAGC CTGGGGCGTG GAGAAACCAT
  GATATAGTTG CCTAAAACAA ACTGCCATGT TTAAATAAAT CAACCAAACT AATCACAAGT
  AAAAGACACT AAGGCTGGCT TTACTCAGGT CTTTTGAATC CTGTGTTTCA CAAAGGCACA
  M
  GAGTTGCTTT CCTAAATTTA AGGAAAAAGA AGTCAGTATT TCACTGACTT GATTTCCAGC
  TCTGTGTGAC ATGAGCCAAG CCAACAGAGA GCGAGGTAAT AACATGGTAA GGAACAGACT
  CCCATTCACC AAGTACACAG GATAGGCCCT GAACTGACCT AATTCTCGCA CGTGTCTCAG
  AGACATTTCC TTTCCTCAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45397816	mCV23994004	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	A
ss135872282	ENSMUSSNP5944248	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss320957248	CHEV_3_127531940	CHEVERUD	SCREENING_POP	f	SNP					A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30114664					SNP	C	C	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127622671 () rs orientation: forward

Symbol	Name	Function Class
Ap1ar	adaptor-related protein complex 1 associated regulatory protein	Intron
Gm43654	predicted gene 43654	533 bp downstream
Rr584870	regulatory region 584870	1506 bp distal
Rr584871	regulatory region 584871	1197 bp proximal
Rr584872	regulatory region 584872	1787 bp proximal