rs30114064 SNP Detail

Summary

• ID
  rs30114064
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145122658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACCCTTGG GCTCTGAGGT
  GTCACAGGAC CACTCAAGTG CTACTATAGA AGTCCAAAGT ACAGTTATGA GAGGAGTGCA
  GAGACTTGTC AGTGCCTGGT GAAAAAGGAA GTCTCGTGAG GATATCTTCT TCCCTCCGTA
  TCTTCTCCCC TTCTTTTCTT ATTTATCTTG AGACTTGAAA CAAACACGTA AAAGGTCACC
  S
  ATTTGTCTGT GTTAAATACA ATGTGAGGAT TTCCCATCAT CTCAATATTT TAACTAAGAA
  ACCACCAGCC AATTTACACA GTGCCTTCCT TCTACAAATA TTTATGATCA TTTGCATACT
  CAAGGGTGAG AGCAAACTGA ACAGGACACT GCACCCACTT CAAAGACCTC ATGCAAGATT
  AGGATGCCAA TGTGAGTATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45398206	mCV23543943	ABI	CRAMUS_MOUSE	f	SNP		C	C						G
ss61093863	NES16613566	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	G	G	G	G		G	C	C	G		C
ss136038407	ENSMUSSNP2705073	ENSEMBL	ENSEMBL_Sanger	f	SNP			C						G
ss321008287	CHEV_3_145079867	CHEVERUD	SCREENING_POP	f	SNP												G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30114064					SNP	C	C	C	C	C	C	C	G	G	G	G	G	G	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61093863	NES16613566	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145122658 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530034A14Rik	RIKEN cDNA 9530034A14 gene			within coordinates
Col24a1	collagen, type XXIV, alpha 1			Intron
				Noncoding-Transcript-Variant
Rr586779	regulatory region 586779			1011 bp proximal
Rr586780	regulatory region 586780			1131 bp proximal