rs30113260 SNP Detail

Summary

• ID
  rs30113260
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58788421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCACATT AAAAAAAAAA
  CCCACAAAAC TCCATATGTT TTTTTTTCCA GCTCATTGAA CTATGTTGGC AATGAACATA
  GTGTATCTAG GAATGATTAA TACCATATGA TTCTTGAATA TCATGTTTTG ATAATGTTCT
  GCAGTGTTTC AAACCAACAA ACCAGAAACA TACACACACA TGTATATATA CACACACACA
  S
  AGATACACAC ACACACAGGG CAGGCAGGGC CAGGAAGGGC TCAAAAGTGG CAGTTTCTGT
  CTTGATGGCT GCTGCACTTG GTGTTTAAAC ACTGTCATTG AAATTTTACA GGTGACATAT
  GATGAAGAGC TATGTCAAAG ACAAACATCC ACTTGTTATA ATGAATGAAA CCATGGTCTT
  GGCAGAAAAG CTAGTGACCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45396659	mCV22834684	ABI	CRAMUS_MOUSE	f	SNP	G	C	G
ss135210074	ENSMUSSNP6997958	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30113260					SNP	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58788421 () rs orientation: forward

Symbol	Name	Function Class
Clrn1	clarin 1	Intron
Rr375038	regulatory region 375038	1386 bp upstream
Rr577289	regulatory region 577289	1869 bp proximal