rs30112479 SNP Detail

Summary

• ID
  rs30112479
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27171767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCTCTGTCGG CCTCCGTGAG CACTGTATGG ATGAGGTACA CAGACATGGA CACTAAATAA
  ACATCCATAC ATAATGGGAA AAAGAAAGAA CCCAAAATGC ACCATTGGTG AAAAAAAAGT
  ATTAAAATAT ATGGTCCTGA ATAAAACTGG TCGTTTATGT TGGATTTTGA AGAATTATTA
  GTAAGTTTTG ATGTGGGAAT AAGACAAGCT AAGGTGCTAT TTTAAAGCAT AGCCATGTAA
  AAGTTGTTTG ACTTTTAAGA GAGGATATTC CTCAAGTTGG TGTAACATTT CATTAGAAAC
  S
  ATGAAGACAT CAGTCTGCAC CTAGGGAAGG AGCTGATGGG GAGCCACGTG TGAAGAAAAT
  GGATACATTA ATGTATACAT AGAGAAATTA CAGTAATAAA GCTAAGGCTC AACGAGGACA
  AGCGAGTTAA GTTAAGGAAC GCTTCCTCCA TGAGCTTACC TTCTGTCTCT CGGATGTCCA
  GCACCTTCTT AATCTGAGAA AGAGGCATGA GATGAATGTG CTTCAGAGAA GCGGGGGGCC
  GGGTGCGGTC GTGGGGACTT CTAAAAGTGC CAATAACCTT GTGCCGCTTT CTTGCTATCT
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45397991	mCV24689234	ABI	CRAMUS_MOUSE	f	SNP	G	C	C
ss134702173	ENSMUSSNP5746525	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30112479					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27171767 () rs orientation: forward

Symbol	Name	Function Class
Ect2	epithelial cell transforming 2	Intron
Rr574348	regulatory region 574348	803 bp proximal