rs30111837 SNP Detail

Summary

• ID
  rs30111837
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:57513559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGA TTTTGGGTTT TTGTTTTTTT
  S
  TTTTGTTTTT TGTTTTTGGG TTTTT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45894498	mCV25134596	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	G	G
ss133241398	ENSMUSSNP3398669	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30111837					SNP	C	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57513559 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17483	CpG island 17483	1314 bp distal
Cpgi17484	CpG island 17484	707 bp distal
Gm45193	predicted gene 45193	within coordinates
Ppm1k	protein phosphatase 1K (PP2C domain containing)	1106 bp upstream
Rr399669	regulatory region 399669	856 bp downstream
Rr631141	regulatory region 631141	1159 bp distal
Rr631142	regulatory region 631142	658 bp distal
Tssr61156	transcription start site region 61156	1179 bp upstream
Tssr61157	transcription start site region 61157	1153 bp upstream
Tssr61158	transcription start site region 61158	1127 bp upstream
Tssr61159	transcription start site region 61159	1077 bp upstream
Tssr61160	transcription start site region 61160	1061 bp upstream