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rs30111027 SNP Detail
Summary
  • ID
    rs30111027
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:64166342 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCTAAAATCA ACATAAATAT
    TCTAATGAAA TAGTTTCCAA TTTCAATGAT GTCGTATTAT AATCCTTGCC AAATAGCAAT
    GTATAGAATA AAATTTTATT TATTATGTCA AGATTATATT ACAAAAGGTC AAATCCCCAA
    TATTAGCAAC AAGCATCAGC AGCTACTTGA AAAACAACGT TAAGGAGAAG ACTGAGCTAT
    R
    ACTTTATCCA GATTTGCATA TTCCATGGAG CTCACAACTC TACTCATCCA GGACAGTGGA
    CACCATGGTG CTGTTAAGCT CACTGCTCAC AGAAGCTGAG GTCAGCTGGA TGCTCCTGTC
    AACAGTGGGG ACTCTTCCAC CAACAGTTTC ATCAGTGTTC CTCTTTGGCC TCAGCAAGAT
    AATGAAGCAC TTGGGAAGAA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
CAST/EiJ
MOLF/EiJ
PWD/PhJ
ss49601993 NES12894139 PERLEGEN MM_PANEL2 f SNP A A A G G A G
SNP Consensus Information
SNP Consensus Type
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
CAST/EiJ
MOLF/EiJ
PWD/PhJ
rs30111027 SNP A A A G G A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss49601993 NES12894139 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:64166342 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr577622 regulatory region 577622 677 bp proximal
Vmn2r3 vomeronasal 2, receptor 3 mRNA-UTR

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory