rs30111027 SNP Detail

Summary

• ID
  rs30111027
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:64166342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAAAATCA ACATAAATAT
  TCTAATGAAA TAGTTTCCAA TTTCAATGAT GTCGTATTAT AATCCTTGCC AAATAGCAAT
  GTATAGAATA AAATTTTATT TATTATGTCA AGATTATATT ACAAAAGGTC AAATCCCCAA
  TATTAGCAAC AAGCATCAGC AGCTACTTGA AAAACAACGT TAAGGAGAAG ACTGAGCTAT
  R
  ACTTTATCCA GATTTGCATA TTCCATGGAG CTCACAACTC TACTCATCCA GGACAGTGGA
  CACCATGGTG CTGTTAAGCT CACTGCTCAC AGAAGCTGAG GTCAGCTGGA TGCTCCTGTC
  AACAGTGGGG ACTCTTCCAC CAACAGTTTC ATCAGTGTTC CTCTTTGGCC TCAGCAAGAT
  AATGAAGCAC TTGGGAAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss49601993	NES12894139	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs30111027					SNP	A	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49601993	NES12894139	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:64166342 () rs orientation: forward

Symbol	Name	Function Class
Rr577622	regulatory region 577622	677 bp proximal
Vmn2r3	vomeronasal 2, receptor 3	mRNA-UTR