rs30110424 SNP Detail

Summary

• ID
  rs30110424
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108205426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATATGTGGTT TTTTATTTTT TTCTTGTTTT GAAAGTAGGC CTTATTTTGT AGCCTACGTA
  GACCTAAAAC TCGTGCTAAA GTCCAGGCTC GAACCTGTGG TTTTAAAGTC CACGGACTGG
  TGCTAAGTTG GCTTCTGTGT TCCTTGAGCT TCCTGTCCAC TTGTAAGGAT CTTATGACAG
  ACGACAGGTG TGGTGTTCTG GTGACTTCGC GGTTAATGAA AAGTGTTCTA ATTTAGACTT
  AGTTTGAGGA GTTCCCAACT TTTAAATTCT GAGTTGTGTG TGTAGGCGAA AGTTAAAAAA
  W
  TTTTTAAAGG AAAAGTAATG TAAGTGCTAT TAATTTAAGT GTGTGCAGGA GATGGGAAAA
  TGATAATAAA TGAGTTTTTT TTTTGTCACC CCCCCCCATC CCCCAATTGG AGCTTTTAGA
  AAATGAAATG TAAAACCTAT CTGGAGCTGC TTAAAATTAA AGGAACATAG TTCTTCTTTC
  AGTGGGGCTG TGCTTCAGCC TGTTTTTACT GCAAAATAGG AGAGGTTTTT AAATAATTAA
  ATTATCAGCC CTTTGAAGAG CTCTCTCCCA TCCCCCCTTC CCAGCAGGGC CTCTGGTTTG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45894230	mCV24650490	ABI	CRAMUS_MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs30110424					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108205426 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	within coordinates
Rr636058	regulatory region 636058	55 bp distal