rs30108838 SNP Detail

Summary

• ID
  rs30108838
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100689014 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  TGCTATGAAC ATAGTGGGGC ATGTGTCCAT ATTACATGTT GGAGCATCTT CTGGGTATAT
  GCCCAGGAGT GTTATAACTG GGTCCTCAGG TAGTACTATA ACCAATTTTC TGAGGAACCA
  CCAGACTGAC TTCCAGAGTG GTTGTACCAG CTTGTAATCC TACCAGCAAT GAAGGAGTGT
  TCTTCTTTCT CCACATCCTC GACAGCATCT GCTGTCACCT GAGTTTTTGA TCTTAGCCAT
  TCTGATTGGT GTGAGGTGGA ATCTCAGGGT TGTTTTGATT TGCATTTCCC TGATGACTTA
  R
  GATTTCTTTA GGTGCTTCTC AGCCATTCGA GTTTCCTCAG TTGAGAATTT TCTGTTTAGT
  TCTGTTCCCC ATTTTTTAAA ATAGGGTTAT TTGTTTCTCT AGAGTCTAAC TTATTAAATT
  CTTTGTATAT ATTGGATGGA TATTAGCCCT CTATTGGATG AATGGTTGGT AAAGATATTT
  TCCCAATCTG TTGGTTGCCA TTTTGTCCTA TTGATAGAGT CCTTTGCTTT ACAGAAACTT
  TGCAATTTTA TGAGGTCCCA TTTGTCAATT CTTGATCTTA GAAATAAGCC ACTGGTGTTC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45395471	mCV22835947	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30108838					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100689014 () rs orientation: reverse

Symbol	Name	Function Class
Cachd1	cache domain containing 1	Intron
Rr596037	regulatory region 596037	1891 bp proximal