rs30108585 SNP Detail

Summary

• ID
  rs30108585
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153513875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGC CCCTGTTCGG AACAGAGCTG
  Y
  TCTGAGCCAC TGAGGAAGCT TGGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss45395163	mCV24023706	ABI	CRAMUS_MOUSE	f	SNP	T	C				C	C
ss47466265	NES10336194	PERLEGEN	MM_PANEL2	f	SNP		C	T	C	C		C	C	C	C
ss136113471	ENSMUSSNP7136672	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs30108585					SNP	T	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47466265	NES10336194	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153513875 () rs orientation: forward

Symbol	Name	Function Class
Rr587763	regulatory region 587763	911 bp distal
Rr587764	regulatory region 587764	1669 bp distal
Rr587765	regulatory region 587765	within coordinates