rs30107242 SNP Detail

Summary

• ID
  rs30107242
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151810300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGTTAGT GCAAGTGTGT
  GCACGTGGTT ATGTATGTGG GTGAGGGTGT AGAAAGTGTA TGTGCATGCA CGTGTGTGGG
  AAAATTTTAA CATGAGTGTT AACTTCCTCG TGGGGATTAA GCCCAGGCTT GTACATTGCA
  TATACCCTAC TACCGAGTTA TACCCCAGCT TCCTCAAAAC TTCACGTATA AGGAACTAAA
  W
  CTTAAGAAAA GCAAATGACA GCATTGATTG CTCCTGCTTC GATGCAATGG GTTTTAATCG
  TCTGTCAGAC TGGCTATAGC AAGTGTCGCG ATTTGAGTGA GAACGGTCCC CATTTGAATG
  TTTGGTCTGC ACTTGGTGGA ACTGATTGTG AAGGATTAGG AGGTGTGGCC TTGTTGGAAG
  AGGTGTGTCT CTGGGGGCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45394661	mCV24970915	ABI	CRAMUS_MOUSE	f	SNP	A	T	T
ss136100790	ENSMUSSNP4222216	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
ss321028034	CHEV_3_151767627	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs30107242					SNP	A	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151810300 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Gm31881	predicted gene, 31881			within coordinates
Gm40179	predicted gene, 40179			within coordinates
Rr587452	regulatory region 587452			136 bp proximal
Rr587453	regulatory region 587453			864 bp proximal
Rr587454	regulatory region 587454			930 bp proximal