rs30106930 SNP Detail

Summary

• ID
  rs30106930
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68948692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATAGACTA ATTTCCCAAA ACAGATACTT TATAGAATAT
  AATTAGCGAA TTAGCTATAT TAGCAAGAAT GAAGAGAGTA CATTAAAAGA ATGCCCATCC
  Y
  GACTATGCTG GGCTTGTACA TCAGTGATAG AGTAAGGTTC TAGGCTCACT CTCCAATACA
  ACTGCATGAA CCTTGTTAAT TGAGTAACAG GAAATCTGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45394578	mCV25211949	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss135264664	ENSMUSSNP1253240	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss320791792	CHEV_3_68845281	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30106930					SNP	T	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68948692 () rs orientation: forward

Symbol	Name	Function Class
Rr578115	regulatory region 578115	850 bp distal
Rr578116	regulatory region 578116	14 bp proximal
Rr578117	regulatory region 578117	853 bp proximal
Trim59	tripartite motif-containing 59	Intron