rs30106821 SNP Detail

Summary

• ID
  rs30106821
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:7733161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACCCGATT GGAAGCCAGC
  TGTGTGCATG GACCCACTGA GGCCAGGCTA TTTGGTGTTA TTTCCTCAGG CAGATTGTTG
  GTGTGATTTT TCTCCTGGGG CTCTGGTTGG GCTTCTAGTT TGGTTGGCAG TACATTTTCC
  CCAAATTACA AATTATAAAT GTGACACAAA CCAAATTCTT ATATTCTACT TTTTTAAACC
  R
  TTAGACAAGT GTTTCCTATC GAAATTTACG TCCCTCAAGT CAGAATGCCT TGCATGAGAC
  TGTGCAATAA AATCACTGCC CACCAGGTGG CAGTCATGGT ACAGTAGCTC TCAAAGACTG
  GCGTTGATTG GGGAGTTGCT CAACGTTTAA ACAGAGTTGC CATCTGACCC AGTAATTCCA
  TTCTTAGATT TATACGCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss45894102	mCV24779767	ABI	CRAMUS_MOUSE	f	SNP	A	A	G		G
ss47785478	NES11723900	PERLEGEN	MM_PANEL2	f	SNP	A			G		G	G	G	A	G	G
ss132954123	ENSMUSSNP2129128	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs30106821					SNP	A	A	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47785478	NES11723900	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7733161 () rs orientation: forward

Symbol	Name	Function Class
Rr626314	regulatory region 626314	705 bp distal
Rr626315	regulatory region 626315	within coordinates
Rr626316	regulatory region 626316	76 bp proximal