rs30106817 SNP Detail

Summary

• ID
  rs30106817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113305515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTA GATGTCAGCC TGGCACAGCT
  R
  TATAGCCACT GGGCTTCTGT AGACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45894098	mCV24112070	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss133564349	ENSMUSSNP3228307	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30106817					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113305515 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17839	CpG island 17839			1186 bp distal
Gm15492	predicted gene 15492			1734 bp upstream
Ogg1	8-oxoguanine DNA-glycosylase 1			Coding-Synonymous
				Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr399830	regulatory region 399830			1668 bp downstream
Rr636489	regulatory region 636489			1833 bp distal
Rr636490	regulatory region 636490			1572 bp distal
Tssr58194	transcription start site region 58194			1541 bp downstream
Tssr58195	transcription start site region 58195			1523 bp downstream
Tssr58196	transcription start site region 58196			1313 bp downstream
Tssr58197	transcription start site region 58197			1290 bp downstream
Tssr62435	transcription start site region 62435			1869 bp upstream
Tssr62436	transcription start site region 62436			1804 bp upstream