rs30106686 SNP Detail

Summary

• ID
  rs30106686
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34073313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATA AAGGAAAGAC AAATACATCA
  Y
  GCGTCGCTGA AAAGTTATGT AAAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45396007	mCV22842355	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss134762059	ENSMUSSNP2479479	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320700963	CHEV_3_33918086	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs30106686					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34073313 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13066	CpG island 13066	290 bp proximal
Fxr1	FMR1 autosomal homolog 1	820 bp upstream
Gm43077	predicted gene 43077	within coordinates
Rr575095	regulatory region 575095	104 bp proximal
Rr575096	regulatory region 575096	624 bp proximal
Rr575097	regulatory region 575097	955 bp proximal
Tssr28785	transcription start site region 28785	705 bp upstream
Tssr28786	transcription start site region 28786	737 bp upstream
Tssr28787	transcription start site region 28787	753 bp upstream
Tssr28788	transcription start site region 28788	768 bp upstream
Tssr28789	transcription start site region 28789	783 bp upstream
Tssr28790	transcription start site region 28790	911 bp upstream
Tssr28791	transcription start site region 28791	919 bp upstream
Tssr32968	transcription start site region 32968	633 bp downstream