rs30106473 SNP Detail

Summary

• ID
  rs30106473
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30173693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACATTATGA AAAAATTTTA
  GATGGTTTTA AAAACTTAAT CCAAAGATAT TTGACTTATT TTAAATATCC ATTTTCTGGT
  CTCCCCCCCC CCCTTGATTT ATGTCAGAAA AAAAAATCTT CAAAAACTAC TTAGCTTCAT
  CTAGTTTCAA ATCAAACCAA TATAAATAAT GGGTAGAATT ACTCACCTGC AGGGAATGTC
  R
  TCCTAAATTT CCTGTTGCTG ACTGTGTAAC CGTAAGCATG ACTGCTGTAT TTACTGGAGG
  CAGTATATAC TGTATAATGT TCCTTAAAAC CTCATGTAAC TAATGCAATA TGATAACCAC
  TCAGGCGCTA CTGTGACGTA AAGGATATAT TACAATTTAA CCCAACTCAA ACAAGAAAAA
  AATAATTTAA AAAGCAGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45394371	mCV24747291	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss134729184	ENSMUSSNP5707197	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs30106473					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30173693 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574719	regulatory region 574719			292 bp distal