rs30106039 SNP Detail

Summary

• ID
  rs30106039
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152060499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGGTTTC AGTCTCTCTA
  CACACAAAGC AACAAAACTC AGGCCTTATA AAGTTATATT TACAAGGGTT CTTTTGTATC
  TGTGTGTGTA CATGTGTGTA CATGTGTACA TGTGGTGATC AGCGTTGGAG GGTGAGTGTC
  TTCTGCTTTA TGTATTTGTT TTGTAAAGAT TGAGCTGGCT GGGGGGGGCA CACTGGCTGG
  R
  GGGGGGCACA CTGGAGACAG AGGCAGAAGA ATCTCTGTGT TCAAGGCCAG CCTGGCTTAC
  ATAGCGGGTT CCAGCCCAGC CAAAACTGCA TAATGAAACC TTGTCCCAAA ACACAAACAA
  AAAATTGATT TATTTTTGTT TTATGATTAT GAATGCATGT ATATATGTGT ATCATATGTA
  TTCCTGGTTC ATGGAGTGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45396301	mCV25024524	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss136102674	ENSMUSSNP4595994	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs30106039					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152060499 () rs orientation: forward

Symbol	Name	Function Class
Rr587537	regulatory region 587537	1855 bp distal
Rr587538	regulatory region 587538	379 bp proximal
Rr587539	regulatory region 587539	1971 bp proximal
Usp33	ubiquitin specific peptidase 33	Intron