rs30105801 SNP Detail

Summary

• ID
  rs30105801
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:94982068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTATGTGG ACTCCTGTTA
  GGGAAGAGCT TTGTATTACT ACGTGCTGTG GGGAGCTGGG CCCCTTCAAA CGTTTAATCA
  TCTGATAAAG AATATAACTA CCTGGGCAGT GGTGGTGCAC GCCTTTAATC CCAGCACTTG
  GGAGGCAGAG GCAGGCGGAT TTCTGAGTTC GAGGCCAGCC TGGTCTACAG AGTGAGTTCC
  R
  GGACAGCCAG GACTACACAG AGAAACCCTG TTTTGAAAAA CAAACAACAA CAACAAATAT
  ATATATATAA AACAAAAATT CAGAGTCTGA TTTGACTGTA TAGTTATAGA AGCTTTGGTC
  CTTTAAAAGA AGGGCAACTG TTTCTTCTAA GAACATGAAA GTAGTTAAAA AAAACAAAAA
  ACCCAACAAC CTCTTTATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45394567	mCV24558413	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	A
ss135509829	ENSMUSSNP5992253	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30105801					SNP	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94982068 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pip5k1a	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha			Intron
				Noncoding-Transcript-Variant
Rr580809	regulatory region 580809			1504 bp distal