rs30105572 SNP Detail

Summary

• ID
  rs30105572
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89067714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGCGCGCAAG TCTCTGGGAG AGCAGCCCAG GCAGGGGAGC TCCGACCCGC GTGCGCCCGG
  GGCACAGGGG GCGTGTGCAG GCGACAGACG TGCGAGAGCT GCGCCCCCTG GCGAGGGCTG
  CGTGAGACTG GGCGGGGCGG GGCGGGGCGG GCCGCTGGCA CAACTGCTGC CCACACTTTC
  CCGAGAGGGC GTGGCTTAGG GGTCCTGAGG GTGGGGTGGG TGCTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTCTGTCT GTCTGTCTGT CTGTGTCTGT
  S
  TGTGTGTCTG TGTGTCTGTG TGGTGGGAGT GCTCAGCTTG CTTCTGGAGG CGGGAAACTC
  ACTAGGGCAT ATGCAGCCTG GGGACCTCCT GAGGGTCAGG GACAGAATGG GAATCTGTTC
  TGACCATGTC CTTTCTCAGC ACTCTCCTAG GAGTCTTGCT ATGCCAGAGA TCCTCTAAAC
  TGCTTTCTGT AGTATGTGTT TCCTAATTCA TTAAGACAAC CTTTAGCAAA ACCATTCACT
  GAGTGCATGC TGAGGATGCA AAACTGAGCA CAGAAATCTT AGCTAAGTCA ATGGTTCATC
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45394839	mCV24134783	ABI	CRAMUS_MOUSE	f	SNP	C	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30105572					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89067714 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13404	CpG island 13404	within coordinates
Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 3	176 bp upstream
Rr579960	regulatory region 579960	within coordinates
Rr579961	regulatory region 579961	181 bp distal
Tssr34093	transcription start site region 34093	205 bp upstream