rs30105523 SNP Detail

Summary

• ID
  rs30105523
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121515912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACGGACCAGC TGACCTCAAG ATTGGTATTG TAGAAGGCTA
  TCTAAGAGGT TCTGCCCTGT CCATTCTCAG ACATAAGCAG GAAGCCTAAT CAAAAGCTAC
  W
  GTGAGTGGGA CGACAGCTTA GTTACTCTTT ACACTTCTCA GAGCCTACAA GGTGGACCCA
  AGTTTGACTT TACTCAAGGA AAGTAAAAAA GGAAGGAAG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45394358	mCV23475917	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
ss135727500	ENSMUSSNP4524425	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
ss320905156	CHEV_3_121425181	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30105523					SNP	T	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121515912 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13760	CpG island 13760	703 bp proximal
F3	coagulation factor III, tissue factor	1274 bp upstream
Gm43823	predicted gene 43823	within coordinates
Gm64338	predicted gene, 64338	within coordinates
Rr584147	regulatory region 584147	1169 bp distal
Rr584148	regulatory region 584148	344 bp distal
Rr584149	regulatory region 584149	387 bp proximal
Rr584150	regulatory region 584150	461 bp proximal
Rr584151	regulatory region 584151	1241 bp proximal
Rr584152	regulatory region 584152	1285 bp proximal
Rr584153	regulatory region 584153	1457 bp proximal
Rr584154	regulatory region 584154	1469 bp proximal
Tssr31453	transcription start site region 31453	1252 bp upstream
Tssr31454	transcription start site region 31454	1293 bp upstream
Tssr31455	transcription start site region 31455	1317 bp upstream
Tssr31456	transcription start site region 31456	1338 bp upstream
Tssr35426	transcription start site region 35426	1132 bp downstream