rs30104227 SNP Detail

Summary

• ID
  rs30104227
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126432670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACTTACT GGCTTTCATG
  TTGCTTTCCA GTAACTAAAT GTCACCCACT TTAATCACGT CATGGTCATC TTTTTTGCTT
  GTTTTTAATG ACACAATTTA ATAAAAAACA TGAATAAGTC TTTCCAAAGT ATTCTAATTT
  ATAAATGTAC CGAAATACGG GCGTTATCAA CCCTTCTCTC TAAGACTTGG TGGGTTACAA
  R
  GACTGGCTCT TGGAATGGTT TCCTCCCAGA TATGCTAATT TCTTTCCATA GCTTAGTTCT
  TCCATTAGAA TCAATCCATT CAAACAGACG AATTACGGAT ACACATTCAT CTTACCCACT
  CCCTGTCTGC TAGAATAGTG CTGTAGCTCT CTAAGGTTGT CAGGGGGGCA GAGGAAAGCT
  CAGTAACTAG GCAACAAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45395788	mCV23466101	ABI	CRAMUS_MOUSE	f	SNP		G	G					A		A
ss46956033	NES10676479	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	A	G		A	A	A	A		G	A	A	G		A
ss135837649	ENSMUSSNP872557	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							A
ss320946886	CHEV_3_126341939	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30104227					SNP	G	G	G	A	G	A	G	A	A	A	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46956033	NES10676479	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126432670 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Rr584663	regulatory region 584663			164 bp distal
Rr584664	regulatory region 584664			within coordinates
Rr584665	regulatory region 584665			1590 bp proximal