rs30103931 SNP Detail

Summary

• ID
  rs30103931
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:122069337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAAAGTA GCCCCTCAGC
  ATGCATCTGC TGATGAAGTT GTTGTTTCTG AAGCAGAGTC TCATGTTTCA GGGGTTTCTA
  TGGTTGTACC TTCCACAGAG AGAAGCAGCA GAAATAAGGC TAATTCTCAA AGAGATTCAA
  GCCAAGAATC ACAGTCGGGA ACTGTATCTG ATGCTGAGTT GTCCTGCTCA GGCATTTCAT
  Y
  GTTAGAGATC TTGCCGAGAA CAACAGCCAG GAATGTGAAG AAGAAATTAC AGTTCCCAGC
  TGAGAAAAAC GATACTAAGA TTACACCAGG AAATAAAAAG CAAATTGTGG GTATGTCTGT
  GTGTTCAGAG GACTCAGATG CTACTCAGTT ATCAGCAAGA CCACTTTCTC AGAGAAATAT
  GCCAAATGTT TCTGATAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss45394546	mCV23980369	ABI	CRAMUS_MOUSE	f	SNP		T	C				C		C
ss51020930	NES13905113	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C		C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30103931					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51020930	NES13905113	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122069337 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13766	CpG island 13766			820 bp distal
Dnttip2	deoxynucleotidyltransferase, terminal, interacting protein 2			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Gm17494	predicted gene, 17494			within coordinates
Rr584273	regulatory region 584273			1290 bp distal
Rr584274	regulatory region 584274			667 bp distal
Tssr31491	transcription start site region 31491			1273 bp downstream
Tssr31492	transcription start site region 31492			108 bp downstream