rs30103295 SNP Detail

Summary

• ID
  rs30103295
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86990955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCCCGGC TGTACGTATT
  GAGCTGGGCA TAACCACTGG AGTGGGACAG GCGGGATGAT GGGCGCCCAT CAAAACGAGT
  AGGGCCAGGG GCACGGTAGT CAGCATACAG CACCGCCCTG GAGGACGGGC GATCTTCGTG
  GGCGCGCACA TTGTAATAAC CATTGGTGGG ATCCTGAGGG CAAGAAGAGA AAAGGGTAAA
  Y
  GTGGGAACTT CCCCCAGTGT AATAAGCTCT CCTGAGTCTT CTGCCCATGC CCAGCTCAAT
  CCATGTCTCC TCCCCTTCTC ACCATACCGG TGATTCTATC TTCTGTTCCT TCTGCAGACT
  TCTTGACCAC TCCTCCCTGC TGTCCTCCCC CTGCAGATCC TCCTACCCCA CGTCCCAGCC
  AGCCAGTCCT TGTGCCTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45394910	mCV24905791	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss135453706	ENSMUSSNP178928	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30103295					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86990955 () rs orientation: forward

Symbol	Name	Function Class
Kirrel1	kirre like nephrin family adhesion molecule 1	Intron
Rr579434	regulatory region 579434	981 bp distal
Rr579435	regulatory region 579435	1224 bp distal