rs30102934 SNP Detail

Summary

• ID
  rs30102934
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:101192611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACCCCCTT TGGTTTTTCA AGACAGAGTT TCTCTGGGTA
  ACCCTGGCTG TCCTGGAGCT AGCTCTGTAG ACCAGGCTGG ACCCTAACTC ACAGAGATCC
  R
  AATGCCTTTG CCTCTCAAGA GCTAAGATTA AAGGCATGGA CCAGTACTTT CCGGCTAGAT
  ATGACTCCTT AATCTTGGGC TTCTCTCCCC CACAGGAGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45395097	mCV22287080	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss135546253	ENSMUSSNP171628	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss320851725	CHEV_3_101089218	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30102934					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101192611 () rs orientation: forward

Symbol	Name	Function Class
Cd2	CD2 antigen	Intron
Rr581990	regulatory region 581990	1689 bp distal
Rr581991	regulatory region 581991	486 bp proximal
Tssr30894	transcription start site region 30894	1138 bp downstream
Tssr30895	transcription start site region 30895	1270 bp upstream
Tssr30896	transcription start site region 30896	1345 bp upstream
Tssr30897	transcription start site region 30897	1380 bp upstream
Tssr34779	transcription start site region 34779	1326 bp upstream