rs30102284 SNP Detail

Summary

• ID
  rs30102284
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127623297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTATGTTT AATTCATCAG
  TTCCACAGCC GAAAACGCTG CCACACATCC AGTACTAAGT GTGCGGCTTT GAGGCTAAAC
  ATGCTCACTG TATATGTAAC GCCATTCCCA TAAGTGCTTC TGTACATAAG ACATGACTAC
  ATCTTTCATA CCATTTTCAC CAGACACTGG TAGTGGCTAG AACTACTGTT GTAACGTAAG
  W
  GGGTCAGACT GTACAAAAGT TCCTGAATCT ATTTAAGAAA AAAAAAGTGC AAACCAGAAT
  AGAAGATCTG ATTTTTTTTT CTAGCATGCT TACAAGGGGA AAGCCTCAGT CCCTGTCTTC
  GTATTTGTAT AATGTGAGGA CAGATACTCG ATTCTTTGGG AAGAGATGGC GTTTCTTCGA
  TACAGATTTC AAACAGTAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45394029	mCV23993983	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A	A
ss135872303	ENSMUSSNP2889896	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		A
ss320957255	CHEV_3_127532566	CHEVERUD	SCREENING_POP	f	SNP						A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30102284					SNP	T	T	T	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127623297 () rs orientation: forward

Symbol	Name	Function Class
Ap1ar	adaptor-related protein complex 1 associated regulatory protein	Intron
Gm43654	predicted gene 43654	within coordinates
Rr584871	regulatory region 584871	571 bp proximal
Rr584872	regulatory region 584872	1161 bp proximal