rs30099545 SNP Detail

Summary

• ID
  rs30099545
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:95289020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTC TGCTCTCCAT CGCTCTCTCT
  Y
  GGCCTCCACG TAGCGAACCT TCCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss46374080	mCV23074452	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss136828235	ENSMUSSNP6105140	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss323100048	CHEV_9_95307386	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs30099545					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95289020 () rs orientation: forward

Symbol	Name	Function Class
Chst2	carbohydrate sulfotransferase 2	mRNA-UTR
Gm35915	predicted gene, 35915	494 bp upstream
Gm37805	predicted gene, 37805	437 bp upstream
Rr684785	regulatory region 684785	1383 bp distal
Rr684786	regulatory region 684786	1179 bp distal
Rr684787	regulatory region 684787	1005 bp distal
Rr684788	regulatory region 684788	982 bp distal
Rr684789	regulatory region 684789	823 bp distal
Rr684790	regulatory region 684790	within coordinates
Rr684791	regulatory region 684791	399 bp proximal
Tssr86547	transcription start site region 86547	458 bp upstream
Tssr90904	transcription start site region 90904	141 bp downstream
Tssr90905	transcription start site region 90905	217 bp downstream
Tssr90906	transcription start site region 90906	234 bp downstream
Tssr90907	transcription start site region 90907	260 bp downstream
Tssr90908	transcription start site region 90908	273 bp downstream
Tssr90909	transcription start site region 90909	314 bp downstream
Tssr90910	transcription start site region 90910	336 bp downstream
Tssr90911	transcription start site region 90911	383 bp downstream
Tssr90912	transcription start site region 90912	800 bp downstream