rs30099240 SNP Detail

Summary

• ID
  rs30099240
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58789467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTAAAAATC CAATAGAATT GAAATCTAGG TCTATAGTAA
  CTGATGGTAA TAAGACAACT AATCACGAAA TGATCAATAC TTTGTTAAAT TATCTTTTCC
  R
  TTGCTCCTAT ACAGGAGCTT TCCTCTGAAT CCCAGTATTT GCTTGGTAAC ATTCAAAAGA
  AGCAATGAGG AAGGGGGCTG CTCTGGGAAT GATTGCTTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss49599270	NES12922505	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	A	A	G	A	A		G	A		G
ss135210116	ENSMUSSNP1255448	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						A
ss320783876	CHEV_3_58685968	CHEVERUD	SCREENING_POP	f	SNP										A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30099240					SNP	G	G	G	A	A	A	G	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49599270	NES12922505	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58789467 () rs orientation: forward

Symbol	Name	Function Class
Clrn1	clarin 1	Intron
Rr375038	regulatory region 375038	340 bp upstream
Rr577289	regulatory region 577289	823 bp proximal
Rr577290	regulatory region 577290	1410 bp proximal