rs30099238 SNP Detail

Summary

• ID
  rs30099238
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58789518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGACAACTA ATCACGAAAT GATCAATACT TTGTTAAATT
  ATCTTTTCCG TTGCTCCTAT ACAGGAGCTT TCCTCTGAAT CCCAGTATTT GCTTGGTAAC
  W
  TTCAAAAGAA GCAATGAGGA AGGGGGCTGC TCTGGGAATG ATTGCTTTCA AATGTCTATT
  TGGGCTGTAG AAATGGCGGT AAAGAAACAC CTCTCTGCA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49599268	NES12922507	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	T	T	A	T	T		T	A	T	A		A
ss135210119	ENSMUSSNP767118	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						T
ss320783877	CHEV_3_58686019	CHEVERUD	SCREENING_POP	f	SNP										T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30099238					SNP	A	A	A	T	T	T	A	T	T	T	T	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49599268	NES12922507	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58789518 () rs orientation: forward

Symbol	Name	Function Class
Clrn1	clarin 1	Intron
Rr375038	regulatory region 375038	289 bp upstream
Rr577289	regulatory region 577289	772 bp proximal
Rr577290	regulatory region 577290	1359 bp proximal