rs30099237 SNP Detail

Summary

• ID
  rs30099237
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58789613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTAACATTCA AAAGAAGCAA TGAGGAAGGG GGCTGCTCTG
  GGAATGATTG CTTTCAAATG TCTATTTGGG CTGTAGAAAT GGCGGTAAAG AAACACCTCT
  Y
  TGCAGTCTCT GGTGGCCACT GTCATTGCTC AAAGGAAGCT TCAATTGAGA AGACAGCCTT
  AAGCCGCTTA CTGTTTTATA TTAATGGGGC AGCCACTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49599267	NES12922508	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	T	C	T		C	T	C		C
ss135210137	ENSMUSSNP6571064	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					T
ss320783881	CHEV_3_58686114	CHEVERUD	SCREENING_POP	f	SNP								T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30099237					SNP	C	C	C	T	T	C	T	T	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49599267	NES12922508	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58789613 () rs orientation: forward

Symbol	Name	Function Class
Clrn1	clarin 1	Intron
Rr375038	regulatory region 375038	194 bp upstream
Rr577289	regulatory region 577289	677 bp proximal
Rr577290	regulatory region 577290	1264 bp proximal