rs30097225 SNP Detail

Summary

• ID
  rs30097225
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51176870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCAATCC TCCTGCCTCT
  GCTCCCTAAG CAAGAGATTA CAAGGGTCTA CTACCACACC CAATTCCAAT TAGTTTTTTA
  AAATTTTCTT GCTTCTACTT CTGACCTCAA ACTTAAGAGT CCCAAATTTA ACAAATTATA
  ACCCCCAAAT ATTTTACTAT TACTTTAAAT ACCCACAATT TATAAGTTGC AAACTAGAAA
  R
  TCCAATACGT TAAGTATAAT CAGCCAGTGT CAATTGAGTA TCACGGGCCC AGTGCTGTGC
  TACCAACTGG ATCCCCTGAG TGTGAACAGG TTCAGAAAGT ACCACCAATC CCAGTGCAGA
  TGTAAGATAA TCTCCTGTTA TTCTGAAATC TAACAGCGTG TTAAAGAGCA GTGATTTCTA
  TTTTGGGAGC TACCATGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49598842	NES12914480	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30097225					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598842	NES12914480	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51176870 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Elf2	E74-like factor 2			Intron
				Noncoding-Transcript-Variant
Rr576257	regulatory region 576257			459 bp distal
Rr576258	regulatory region 576258			585 bp proximal