rs30097122 SNP Detail

Summary

• ID
  rs30097122
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58791518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACTGTTGGT GTGCATTTCT CAGCAGATCA CTTTAAAAAT
  TTTGTAGGCA AATAATTCCA AATTGGTTAA ATATGAAAAC AGAAGTTGTT AAATCAGCAG
  Y
  CAGGGTTTTA GCAGTGTGGG GCAGGCTAAG AAACACAGTC ATGGGCCAAT GGAAATGCAA
  GTAAACTGGT CCCCTTTTAA AGGACAAAAG GCACAAAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49599252	NES12922523	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	T	C	T	C	T		C	C	T	C		C
ss320783897	CHEV_3_58688019	CHEVERUD	SCREENING_POP	f	SNP										T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30097122					SNP	C	C	C	T	T	C	T	C	T	T	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49599252	NES12922523	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58791518 () rs orientation: forward

Symbol	Name	Function Class
Clrn1	clarin 1	Intron
Rr375038	regulatory region 375038	179 bp downstream
Rr577289	regulatory region 577289	770 bp distal
Rr577290	regulatory region 577290	299 bp distal
Tssr33373	transcription start site region 33373	1223 bp downstream