rs30096293 SNP Detail

Summary

• ID
  rs30096293
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51177117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCAGTGCT GTGCTACCAA
  CTGGATCCCC TGAGTGTGAA CAGGTTCAGA AAGTACCACC AATCCCAGTG CAGATGTAAG
  ATAATCTCCT GTTATTCTGA AATCTAACAG CGTGTTAAAG AGCAGTGATT TCTATTTTGG
  GAGCTACCAT GTTCATCTGC AGCTCAATGC TAAACATAAA TAAAAATCTA AAAGCCAAGC
  R
  TCAGGTAAAT TAAAATATAA TGAGAGTTTC CAAGAATATG TTACCCATTT TATAGAAGTG
  AGGAGTCAAC AGGTAATTTT CTAAAACAGT CTTTGGTAAC AGAGACTTAA TACCTTTCCA
  TTTCTGTGAT TTTAAAAACT TCAATGCTGG GCCGGTGCAA TGGCTCAGCG GGTAAGAGCA
  CTGAGTGTTC TTCTGAAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49598840	NES12914482	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30096293					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598840	NES12914482	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51177117 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Elf2	E74-like factor 2			Intron
				Noncoding-Transcript-Variant
Rr576257	regulatory region 576257			706 bp distal
Rr576258	regulatory region 576258			338 bp proximal