rs30095909 SNP Detail

Summary

• ID
  rs30095909
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:99567760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACTG CCGACTAAAG TCCATAGCAA
  R
  AGAATGCTCA GGGGATTCCT GGCCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39150337	mCV23729243	ABI	CRAMUS_MOUSE	f	SNP		A				G		A
ss52684836	NES15534677	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A		G	A	A	A		A	A	G	A		G
ss145068577	ENSMUSSNP4786348	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
ss324503047	CHEV_13_100201207	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30095909					SNP	G	A	A	A	A	G	G	A	A	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52684836	NES15534677	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:99567760 () rs orientation: forward

Symbol	Name	Function Class
Map1b	microtubule-associated protein 1B	Coding-NonSynonymous
Tssr4149	transcription start site region 4149	1617 bp downstream
Tssr123696	transcription start site region 123696	1351 bp upstream
Tssr123697	transcription start site region 123697	1160 bp upstream
Tssr123698	transcription start site region 123698	1010 bp upstream
Tssr123699	transcription start site region 123699	926 bp upstream
Tssr123700	transcription start site region 123700	879 bp upstream
Tssr123701	transcription start site region 123701	854 bp upstream
Tssr123702	transcription start site region 123702	835 bp upstream
Tssr123703	transcription start site region 123703	783 bp upstream
Tssr123704	transcription start site region 123704	727 bp upstream
Tssr123705	transcription start site region 123705	426 bp upstream
Tssr123706	transcription start site region 123706	199 bp upstream
Tssr123707	transcription start site region 123707	7 bp upstream
Tssr123708	transcription start site region 123708	180 bp downstream
Tssr123709	transcription start site region 123709	349 bp downstream
Tssr123710	transcription start site region 123710	1556 bp downstream
Tssr123711	transcription start site region 123711	1762 bp downstream
Tssr123712	transcription start site region 123712	1992 bp downstream