rs30095841 SNP Detail

Summary

• ID
  rs30095841
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53531529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTC CTCGTTCGGG TGTGCTCGTT
  Y
  GGGTGTGAAG TGCTTGGACT CGATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss39149312	mCV24544365	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss324341586	CHEV_13_53472862	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30095841					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53531529 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5620	CpG island 5620	within coordinates
Rr403780	regulatory region 403780	within coordinates
Rr480032	regulatory region 480032	within coordinates
Sptlc1	serine palmitoyltransferase, long chain base subunit 1	128 bp upstream
Tssr122583	transcription start site region 122583	120 bp upstream