rs30094088 SNP Detail

Summary

• ID
  rs30094088
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115616483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCCGCTC AAACTTGGCA
  TCAGATGACC CAATGTTTCT TTCTCCACAT AATCGCGATG TTCTAATCAG CCTGTGACTC
  TGACCTTTCG GGCAGCAGGC AGCCTATTAT TACTTAGTGG CTGATGAATC CAGAGTCAAC
  ATTTGGAAGC TGAAGAATGC CCATCTTCTT TCAAAATCTT TTGGCTTTTA AAAAGCTGAG
  M
  ACAGCAAAGA GCGTTGCCAG CAGTCAGCCC CTTCATGCAA ATGAACTAAC CCATAAACAG
  GAAATACTTA AAGGACGCAG AAAACTGGAG AATTGTATGT TTATCTTATA TGGTAAATAG
  ATTTAAATTC AGTAAATGTA TTGATTGACA CCCAGTTTTA AAAGTAGAAA AATTGCAAGT
  TCAAAACCAG CCTGGAAAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46914069	NES10688654	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A		C	C	A		A
ss320893332	CHEV_3_115525752	CHEVERUD	SCREENING_POP	f	SNP										A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30094088					SNP	A	A	A	A	A	A	A	A	A	A	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46914069	NES10688654	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115616483 () rs orientation: forward

Symbol	Name	Function Class
Rr583610	regulatory region 583610	within coordinates