rs30091420 SNP Detail

Summary

• ID
  rs30091420
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51416769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACATGT GCGCACGCAC
  AAGTATGTGC TTACACATGC ACTCAGGTGG AGTGGTATAA TTGTAATTTC ACGTGTATAA
  ATATATAAAC AAGAGATGAC AGCTATCTTA CTACTTGCTT AGGAAGCAAA ATCGTTGCTA
  TGGGGTATGC TACCTCCTTT GGTATACATA ACCCACTCAA ATGACAAGCT GGACTGTGAA
  K
  TTTTAAAATT AGTTTCCTAT GGATTGGCAA GATGGTTCAG CCATCCAAAG CAGGGATGCT
  GAGGCTGTGA CAATCTTGGT TTCATCCCTG GGATCCACAC ATCGGAGGGA ACTAACCTCT
  ACAAGCTGCC CTCTGACCTC CACACTCATG CTAACACACA CACACACACA CACACACACA
  CACACACACA CACACACACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss49597788	NES12916051	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs30091420					SNP	T	T	T	T	T	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49597788	NES12916051	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51416769 () rs orientation: forward

Symbol	Name	Function Class
Gm36008	predicted gene, 36008	1688 bp upstream
Gm65568	predicted gene, 65568	1780 bp upstream
Rr367429	regulatory region 367429	1702 bp upstream
Rr576327	regulatory region 576327	1536 bp proximal
Rr576328	regulatory region 576328	1700 bp proximal
Rr576329	regulatory region 576329	1791 bp proximal