rs30091419 SNP Detail

Summary

• ID
  rs30091419
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51417662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAGCTGG AGCCTGGAAT
  CAAGAAGAAA TCCATGAAGC TGCCTACTAC CTGTAACTTG ATTTAATTCC TTGTGTTTGG
  TGCATATGAT GAAGGCGAAG ACAACATCGT CCATGAACCA GGACTCTCTC TGCAGCAGGG
  ACTGAGCACT GAAGATGACA TAGGGAAGTT CAGGGTTTAG AGCCTTTAGG ACTAATGGGC
  S
  CATAACTGCA TTCTAGCTAA AGCACCTTAA AGTGCCTGGA GACTTAAAAA AAACAAAAAC
  AAAAAACAAA ACAAAACAAA ACAAAATAAA AAAACACCTC TGGATGGTGG TGGCACACTC
  CTTTAATCCC AGCATTTGGG AGGTTGAGGC GGGTGGATTT CTGGGTTCTG AGGCCAGCCT
  AGTCTACAGA GTGAGTTCCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss49597787	NES12915983	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs30091419					SNP	G	G	G	G	G	G	C	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49597787	NES12915983	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51417662 () rs orientation: forward

Symbol	Name	Function Class
Gm36008	predicted gene, 36008	795 bp upstream
Gm65568	predicted gene, 65568	887 bp upstream
Rr367429	regulatory region 367429	809 bp upstream
Rr576327	regulatory region 576327	643 bp proximal
Rr576328	regulatory region 576328	807 bp proximal
Rr576329	regulatory region 576329	898 bp proximal