rs30091418 SNP Detail

Summary

• ID
  rs30091418
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51417927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAAACAA AACAAAACAA
  AATAAAAAAA CACCTCTGGA TGGTGGTGGC ACACTCCTTT AATCCCAGCA TTTGGGAGGT
  TGAGGCGGGT GGATTTCTGG GTTCTGAGGC CAGCCTAGTC TACAGAGTGA GTTCCAGGAC
  ACAGAGAAAC TTTGTCTTGA AAATCAAACC CCAAACCCCA AACCATACCA AACAAAAGAA
  Y
  CTTTGTCTTT AAATATAAAC CAGCTTTGTT TGATGCAGTT TACTGTAGGC ACCAAATGTA
  CTATTAGCCG TCTTAAATAT GGGCTTTAAA AACAATTACG AAGCTATTCA AAGTTCAATC
  TGGTGATTAA GAAAAAGATT AGGTAAAGTT GGTTTTGTCC TTTGTGATGT GTGCATGATT
  GAGCACGTGT GTGTTTGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss49597786	NES12915977	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs30091418					SNP	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49597786	NES12915977	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51417927 () rs orientation: forward

Symbol	Name	Function Class
Gm36008	predicted gene, 36008	530 bp upstream
Gm65568	predicted gene, 65568	622 bp upstream
Rr367429	regulatory region 367429	544 bp upstream
Rr576327	regulatory region 576327	378 bp proximal
Rr576328	regulatory region 576328	542 bp proximal
Rr576329	regulatory region 576329	633 bp proximal