rs30091416 SNP Detail

Summary

• ID
  rs30091416
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51418429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCAGCCA CACCTGGGCA
  GACTTCTCCT TTTTATTCTT CTTTGTTTTG TTTGTTTGTT GTGTTTTTTG TTTTGAGAAG
  TTCTTATGTA GCCCAGGCTA GCCTTGATAT AGCCCAGGGT GACTTGAATT CCTGATTTTC
  CAGCCTCTGT TTCCCTTCTC AAGTGGTATG TGCCTGGCCT TTGTGTTTCT TTTGAAGACA
  Y
  GTAGGAACTA GGCCTTAGGA AATGATAGGA GGATAAGCTC TCGCCACAAG AGGGCGCTGA
  GCCACAGAGA AAGCCAAGGA TTGTCTGGGA AGCAAAAGCT AGGGGTGAAG GCAATTTCCG
  GGGAGCCCCT AAGGAGTCAG CGGATGGGAG GTAACTTTCA TTTTTCTCCT CACTTCAGTC
  GCTCAGACTC CAAGCACAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss49597784	NES12915957	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs30091416					SNP	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49597784	NES12915957	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51418429 () rs orientation: forward

Symbol	Name	Function Class
Gm36008	predicted gene, 36008	28 bp upstream
Gm65568	predicted gene, 65568	120 bp upstream
Rr367429	regulatory region 367429	42 bp upstream
Rr576327	regulatory region 576327	within coordinates
Rr576328	regulatory region 576328	40 bp proximal
Rr576329	regulatory region 576329	131 bp proximal