rs30091415 SNP Detail

Summary

• ID
  rs30091415
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51418471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTTTGTT TGTTTGTTGT
  GTTTTTTGTT TTGAGAAGTT CTTATGTAGC CCAGGCTAGC CTTGATATAG CCCAGGGTGA
  CTTGAATTCC TGATTTTCCA GCCTCTGTTT CCCTTCTCAA GTGGTATGTG CCTGGCCTTT
  GTGTTTCTTT TGAAGACACG TAGGAACTAG GCCTTAGGAA ATGATAGGAG GATAAGCTCT
  Y
  GCCACAAGAG GGCGCTGAGC CACAGAGAAA GCCAAGGATT GTCTGGGAAG CAAAAGCTAG
  GGGTGAAGGC AATTTCCGGG GAGCCCCTAA GGAGTCAGCG GATGGGAGGT AACTTTCATT
  TTTCTCCTCA CTTCAGTCGC TCAGACTCCA AGCACAGGGC TCACTCTTCA TTCATTCCCA
  GCATCTTCTT TTCCGTTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss49597783	NES12915958	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs30091415					SNP	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49597783	NES12915958	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51418471 () rs orientation: forward

Symbol	Name	Function Class
Gm36008	predicted gene, 36008	within coordinates
Gm65568	predicted gene, 65568	78 bp upstream
Rr367429	regulatory region 367429	within coordinates
Rr576327	regulatory region 576327	within coordinates
Rr576328	regulatory region 576328	within coordinates
Rr576329	regulatory region 576329	89 bp proximal