rs30090920 SNP Detail

Summary

• ID
  rs30090920
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51315375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATGCTGTC CTTCCAACCT
  TAGAAGCCTC ACACTGTGAT TAAATGACCA ACCCTCACCT CTGTGTATGT TAATTAGAAG
  TCAGAGAGCA GCTACTTTCT TAGAACCACA GTCTGACAGA CTGTGTAACT AGAACAATGA
  CTAATGCAAT GATAAGATTC TTGGGAATCA AAGACCTAAT TTCAATCCTT AATGATCTCC
  R
  CAGCAATTAA GCCTTCCATC AGGAAAAACT TTCAAAAATG TAGATGAACT TGGAGCCGCA
  GAGATGGCTT GGCAGTTAAG AGCATGTACT GCTTGCAAAG GACCCAAGTT TGGTCCCCAG
  GACCAACAAC AAGCAGCTCA GAAATGTCTG TAACTTCAGC TCCAGGGGAC TCGGTGAGTA
  CGGTACTCAC ATAAATCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49598180	NES12918030	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30090920					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598180	NES12918030	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51315375 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13138	CpG island 13138			590 bp proximal
Ndufc1	NADH:ubiquinone oxidoreductase subunit C1			Intron
				Noncoding-Transcript-Variant
Rr374943	regulatory region 374943			295 bp upstream
Rr576310	regulatory region 576310			967 bp proximal
Rr576311	regulatory region 576311			1000 bp proximal
Rr576312	regulatory region 576312			1051 bp proximal
Rr576313	regulatory region 576313			1074 bp proximal
Tssr33211	transcription start site region 33211			971 bp downstream