rs30090918 SNP Detail

Summary

• ID
  rs30090918
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51316144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGGTCGT CCTTGGTACT
  CAGGGCGCCT TCAAAGCTTG GGTTAAAGCC TCGTCGGCCC TCATAGGCTC TGGAGTGGGA
  GGTTGGGAGG CAGCCCCGGA AGGGTCTCCC AGACATTGAA AAGCCTGGGA CAAAAAGACT
  CAAAATCCAT TCGCAGAGGT CAGGGTTTAG CCTGGAGGAA AGCTGACGGC TAATGATGAG
  Y
  GGAGAACCCG GCTCGCGGCC AGTGAAGGTC ACTGCAGGTC GGCCTGGACC GCGACCTCCT
  CCTCCTCCGG AGATTCCAGG GTGGCTCGTG TTGGATGAGG GCTAGGCTGA GGGCCGAATG
  GGCTCTGAAA AGACACTCAC AGCAGCTCGG CAGCCGGGCG GGGGCCAGCA GCCGCGAAAA
  CGAGCGCAGC ACTACGGACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49598178	NES12918012	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30090918					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598178	NES12918012	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51316144 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13138	CpG island 13138	within coordinates
Ndufc1	NADH:ubiquinone oxidoreductase subunit C1	Intron
Rr374943	regulatory region 374943	within coordinates
Rr576310	regulatory region 576310	198 bp proximal
Rr576311	regulatory region 576311	231 bp proximal
Rr576312	regulatory region 576312	282 bp proximal
Rr576313	regulatory region 576313	305 bp proximal
Tssr33211	transcription start site region 33211	202 bp downstream