rs30090915 SNP Detail

Summary

• ID
  rs30090915
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51316357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCGGCCAG TGAAGGTCAC
  TGCAGGTCGG CCTGGACCGC GACCTCCTCC TCCTCCGGAG ATTCCAGGGT GGCTCGTGTT
  GGATGAGGGC TAGGCTGAGG GCCGAATGGG CTCTGAAAAG ACACTCACAG CAGCTCGGCA
  GCCGGGCGGG GGCCAGCAGC CGCGAAAACG AGCGCAGCAC TACGGACGGC GCCATCTTGT
  Y
  CCGCAGGCTC CGCCTCTTCT CGGGTTGCTC GTTTGGCCGA GCTGGCACCG CCTTCTCCCT
  GCGCGCGCAT CTCCGGTTGG TGGCGCAGAG CGCAGCGCCC CCTGGCAGCA GAACTGGGAC
  TCGCAGGTGG GCCAGACTCC TACCTTCATT CAGTACAAGG TTCCCAAGAA CCCGGACTTA
  GTGGGCTGTG AATAAAACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49598175	NES12918015	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30090915					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598175	NES12918015	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51316357 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13138	CpG island 13138	within coordinates
Ndufc1	NADH:ubiquinone oxidoreductase subunit C1	mRNA-UTR
Rr374943	regulatory region 374943	within coordinates
Rr576310	regulatory region 576310	within coordinates
Rr576311	regulatory region 576311	18 bp proximal
Rr576312	regulatory region 576312	69 bp proximal
Rr576313	regulatory region 576313	92 bp proximal
Tssr33211	transcription start site region 33211	within coordinates