rs30090399 SNP Detail

Summary

• ID
  rs30090399
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51224703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTCCTCTG TGTTTGTTAA GGAGCTTCCT TCCCACTGCT
  GACCTCAGAC TCTGCTGCCT TACTTCTACA GCACCATTTA ACAAGCTGCT CAGGTGGTGC
  W
  CTTCAGTGCT GCGTGCTCCA TAAAGCTTAC GTAAATTTTC CACTACTAGA TGATACATTT
  CACTTACGTT CTTGCCTTAA GAGTATTACA GTGGACAGTT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	KK/HlJ	PWD/PhJ
ss49598565	NES12925060	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	KK/HlJ	PWD/PhJ
rs30090399					SNP	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598565	NES12925060	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51224703 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D3Mit274	DNA segment, Chr 3, Massachusetts Institute of Technology 274			1008 bp distal
Elf2	E74-like factor 2			Intron
				Noncoding-Transcript-Variant
Rr576268	regulatory region 576268			946 bp proximal