rs30090398 SNP Detail

Summary

• ID
  rs30090398
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51224809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTGTTTG TTAAGGAGCT
  TCCTTCCCAC TGCTGACCTC AGACTCTGCT GCCTTACTTC TACAGCACCA TTTAACAAGC
  TGCTCAGGTG GTGCACTTCA GTGCTGCGTG CTCCATAAAG CTTACGTAAA TTTTCCACTA
  CTAGATGATA CATTTCACTT ACGTTCTTGC CTTAAGAGTA TTACAGTGGA CAGTTACGTA
  Y
  CGATCAGCTT TTTCAGGTGG AGGGCAGGGG GCAACACCAG GGATCTTGCC CAGGGTCCTG
  TACAGGCTAG ACACATATAC CCCTACCCTC CTGAACCAGT TTTTAAGGTT AAAGTCCAAC
  TATCCTTAAT TCTAGAGCTA ATTTAGCCCT ACTATGTAAG ACATGACCCT TGTGGGTTTG
  TTTTATTTTA AAATAAGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49598564	NES12913640	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30090398					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598564	NES12913640	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51224809 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D3Mit274	DNA segment, Chr 3, Massachusetts Institute of Technology 274			1114 bp distal
Elf2	E74-like factor 2			Intron
				Noncoding-Transcript-Variant
Rr576268	regulatory region 576268			840 bp proximal