rs30090236 SNP Detail

Summary

• ID
  rs30090236
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37729890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCATTGCT ATTTTGACCA AAATAGATGT GCACATGGAA
  GACCATAGTA CAAATCCAGG TCTCGTGATG CAAAACCCAT CCAATCTCCA GTGGCCCACG
  S
  AGGGAGCAGT TGTTGGGCTC AGAGAGAGAG GAACACATTG AGTGGAGTCA AGGGTCTAGT
  CAGGGTGAGT GAACTTGAAC TTGGCTAATG TACAGGCAGT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ
ss46913219	NES10828102	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ
rs30090236					SNP	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46913219	NES10828102	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37729890 () rs orientation: forward

Symbol	Name	Function Class
Rr374835	regulatory region 374835	1320 bp downstream
Rr406863	regulatory region 406863	1665 bp distal
Rr575538	regulatory region 575538	1483 bp distal
Rr575539	regulatory region 575539	53 bp distal