rs30089423 SNP Detail

Summary

• ID
  rs30089423
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51225328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGAAGAG CAGTCAGTGC
  TCTTAACCAC TGAGCCATCC CTCCAGCCCC CAGTCAATGT CCTGGGCTTT CAACAAGGAC
  CCTTCTGCCT GGCTGACTAG AATGCCAGTA TCTCCCAGCA GAAGAAGTGA GTTTGTGCCT
  TTTTGGCCAG CCTTTGCTTG GCTTCATGGA GCCTCAACCT CTGGGTGATC CAGCCAGAGA
  M
  GACGGAGCCC CACGATGCAT GCAGCTCTTT CTTTAGCGCG GGGCTTCTCT GCGTTTTGGA
  CACTGCATCC CTCACAAGAG CTCACGATTT GCTCCCTTGA TTGGAGGCGA TGATGACTTC
  CTTAGGACTC TTTCTGAGGA TGCCCCCTTG TCATTACATG CTTTCTCTGT TTTCCTGTTT
  GCTTACACTG CTCTCACAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49598559	NES12913625	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30089423					SNP	A	A	A	A	A	A	A	A	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598559	NES12913625	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51225328 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D3Mit274	DNA segment, Chr 3, Massachusetts Institute of Technology 274			1633 bp distal
Elf2	E74-like factor 2			Intron
				Noncoding-Transcript-Variant
Rr576268	regulatory region 576268			321 bp proximal