rs30088572 SNP Detail

Summary

• ID
  rs30088572
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51262768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTCCTG GGGCTGGCGA
  GATGGCTCAG TGGTTAAGAG CACCGATTGT TCTTCTGAAG GTTCCGAGTT CAAATCCCAG
  CAACCACCTG GTGGCTCACA GCCTTCCGTA ACGAAATCTG ATGCCCTCTT CTGGAGTGTC
  TGAGGACAGC TACAGTGTAC TTACATATAA TAAGTAAATA AATCTTTTTA AAAAAAGTTC
  Y
  TCTCTCCTCT TAGAGCATGC AATGCAATTG AGTCAATGCA TTCTAAAAGC ATTTATAATG
  GGATTCTACA GTACATAAAA TAGATTTAAG AGTGATTAAG ACGTAGACTC TGATGATAAA
  CGAAATTGTT CAGTTCTCAG CACCACCGCT TACTAAGATG TATATAACCT TGCTGAAGTA
  CTTAATCACC TGTTGTGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49598451	NES12919376	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30088572					SNP	C	C	C	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598451	NES12919376	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51262768 () rs orientation: forward

Symbol	Name	Function Class
Rr576282	regulatory region 576282	1377 bp distal
Rr576283	regulatory region 576283	1773 bp distal
Rr576284	regulatory region 576284	1114 bp distal
Rr576285	regulatory region 576285	62 bp distal
Rr576286	regulatory region 576286	1711 bp proximal